python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_286_b1_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_256_b1_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_408L_b1_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_157_b1_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_381_b1_Lung_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_107_b1_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_226_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL1_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL2_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL3_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL4_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL5_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL6_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL7_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL8_b1_ATAC_lung.barcodes_annotated.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL17_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL18_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL19_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL21_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL22_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL23_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b1_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_174_b2_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_77_b2_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_49_b2_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_333_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_304_b2_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_125_b2_Lung_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_198_b2_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL10_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL11_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL12_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL13_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL14_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL15_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL16_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL9_b2_ATAC_lung.barcodes_annotated.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL26_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL27_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL28_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL29_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL30_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL31_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.T_24_b2_Lung_PCW17.end2.fastq.gz